top of page
Decorative picture

PUBLICATIONS

2022

​

  • Detsika MG, Sakkou M, Triantafyllidou V, Konstantopoulos D, Grigoriou E, Psarra K, Jahaj E, Dimopoulou I, Orfanos SE, Tsirogianni A and Kollias G, 2022. "Upregulation of CD55 complement regulator in distinct PBMC subpopulations of COVID-19 patients is associated with suppression of interferon responses", bioRxiv. https://www.biorxiv.org/content/10.1101/2022.10.07.510750v1

  • Armaka M, Konstantopoulos D, Tzaferis C, Lavigne MD, Sakkou M, Liakos A, Sfikakis PP, Dimopoulos MA, Fousteri M & Kollias G. 2022, "Single-cell multimodal analysis identifies common regulatory programs in synovial fibroblasts of rheumatoid arthritis patients and modeled TNF-driven arthritis.", Genome Med. , 14(1) :78. https://pubmed.ncbi.nlm.nih.gov/35879783/

  • Tzaferis C, Karatzas E, Baltoumas FA, Pavlopoulos GA, Kollias G, Konstantopoulos D. 2022, "SCALA: A web application for multimodal analysis of single cell next generation sequencing data", bioRxiv, https://www.biorxiv.org/content/10.1101/2022.11.24.517826v1

  • Kerdidani D, Aerakis E, Verrou KM, Angelidis I, Douka K, Maniou MA, Stamoulis P, Goudevenou K, Prados A, Tzaferis C, Ntafis V, Vamvakaris I, Kaniaris E, Vachlas K, Sepsas E, Koutsopoulos A, Potaris K, Tsoumakidou M. Lung tumor MHCII immunity depends on in situ antigen presentation by fibroblasts. J Exp Med. 2022 Feb 7;219(2):e20210815. doi: 10.1084/jem.20210815. Epub 2022 Jan 14. PMID: 35029648; PMCID: PMC8764966. https://doi.org/10.1084/jem.2021081

 

2021

​

  • Thanati F., Karatzas E., Baltoumas F., Stravopodis DJ., Eliopoulos AG., Pavlopoulos GA. Flame: A web tool for functional and literature enrichment analysis using multiple gene lists. Biology,14 Jul 2021, 10(7), 665; https://doi.org/10.3390/biology10070665 PMID:34356520

  • Baltoumas FA., Zafeiropoulou S., Karatzas E., Paragkamian S., Thanati F., Iliopoulos I., Eliopoulos GA., Schneider R., Jensen LJ., Pafilis E., Pavlopoulos GA. OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis. NAR Genomics and Bioinformatics, Volume 3, Issue 4, December 2021, lqab090, https://doi.org/10.1093/nargab/lqab090 PMID: 34632381

  • Verrou, K.M., Vlachogiannis, N.I., Ampatziadis-Michailidis, G., Moulos, P., Pavlopoulos, G.A., Hatzis, P., Kollias, G. and Sfikakis, P.P., 2021. Distinct transcriptional profile of blood mononuclear cells in Behçet’s disease: insights into the central role of neutrophil chemotaxis. Rheumatology, 60(10), pp.4910-4919 https://pubmed.ncbi.nlm.nih.gov/33493315/

  • Kostaki EG, Pavlopoulos GA, Verrou KM, Michailidis GA, Harokopos V, Hatzis P, Moulos P, Siafakas N, Pournaras S, Hadjichristodoulou C, Chatzopoulou F, Chatzidimitriou D, Panagopoulos P, Lourida P, Argyraki A, Lytras T, Sapounas S, Gerolymatos G, Panagiotakopoulos G, Prezerakos P, Tsiodras S, Sypsa V, Hatzakis A, Anastassopoulou C, Spanakis N, Tsakris A, Dimopoulos MA, Kotanidou A, Sfikakis P, Kollias G, Magiorkinis G, Paraskevis D. Molecular epidemiology of SARS-CoV-2 in Greece demonstrates low rates of onward virus transmission despite the lift in summer travel restrictions. mSphere, 2021 Jun 30:e0018021. doi: 10.1128/mSphere.00180-21. PMID:34190583. https://pubmed.ncbi.nlm.nih.gov/34190583/

  • Thanati F., Karatzas E., Baltoumas F., Stravopodis DJ., Eliopoulos AG., Pavlopoulos GA. Flame: A web tool for functional and literature enrichment analysis using multiple gene lists. Biology,14 Jul 2021, 10(7), 665; https://doi.org/10.3390/biology10070665 PMID:34356520.

  • Petros P. Sfikakis, Kleio-Maria Verrou, Ourania Tsitsilonis, Dimitrios Paraskevis, Efstathios Kastritis, Evi Lianidou, Paraskevi Moutsatsou, Evangelos Terpos, Ioannis Trougakos, Vasiliki Chini, Menelaos Manoloukos, Panagiotis Moulos, Georgios A. Pavlopoulos, George Kollias, Giannis Ampatziadis-Michailidis, Pantelis Hatzis, Meletios A Dimopoulos. Blood transcriptomes of anti-SARS-CoV2 antibody positive healthy individuals with prior asymptomatic versus clinical infection. Front. Immunol., 05 October 2021 https://pubmed.ncbi.nlm.nih.gov/34675930/

  • Ilir I. Cinoku, Kleio-Maria Verrou, Evangelia Piperi, Michael Voulgarelis, Haralampos M. Moutsopoulos, Clio P. Mavragani. (2021) Interferon (IFN)-stimulated gene 15: A novel biomarker for lymphoma development in Sjögren's syndrome. Journal of Autoimmunity, Volume 123, 2021, 102704, ISSN 0896-8411, https://doi.org/10.1016/j.jaut.2021.102704  

  • Baltoumas FA., Zafeiropoulou S., Karatzas E., Koutrouli M., Thanati F., Voutsadaki K., Gkonta M., Hotova J., Kasionis I., Hatzis P., Pavlopoulos GA Biomolecule and bioentity interaction databases in Systems Biology: a comprehensive review. Biomolecules, 2021, 11, 1245. https://doi.org/10.3390/biom11081245 PMID:34439912

  • Stamatakis G, Samiotaki M, Temponeras I, Panayotou G, Stratikos E. Allotypic variation in antigen processing controls antigenic peptide generation from SARS-CoV-2 S1 spike glycoprotein. J Biol Chem. 2021;297(5):101329 https://dx.doi.org/10.1016%2Fj.jbc.2021.101329

  • Katsarou, K.; Adkar-Purushothama, C.R.; Tassios, E.; Samiotaki, M.; Andronis, C.; Lisón, P.; Nikolaou, C.; Perreault, J.-P.; Kalantidis, K. Revisiting the Non-Coding Nature of Pospiviroids. Cells 2022, 11, 265. https://doi.org/10.3390/cells11020265

  • Temponeras, I.; Stamatakis, G.; Samiotaki, M.; Georgiadis, D.; Pratsinis, H.; Panayotou, G.; Stratikos, E. ERAP2 Inhibition Induces Cell-Surface Presentation by MOLT-4 Leukemia Cancer Cells of Many Novel and Potentially Antigenic Peptides. Int. J. Mol. Sci. 2022, 23, 1913. https://doi.org/10.3390/ijms23031913

  • Verrou KM, Pavlopoulos GA and Moulos P. Protocol for unbiased, consolidated variant calling from whole exome sequencing data. STAR Protocols,Volume 3, Issue 2,2022,101418,ISSN 2666-1667, https://doi.org/10.1016/j.xpro.2022.101418 .

  • Nikolaos I. Vlachogiannis, Kleio-Maria Verrou, Konstantinos Stellos, Petros P. Sfikakis, Dimitrios Paraskevis, The role of A-to-I RNA editing in infections by RNA viruses: Possible implications for SARS-CoV-2 infection, Clinical Immunology, Volume 226, 2021, 108699, ISSN 1521-6616, https://doi.org/10.1016/j.clim.2021.108699 .

 

2020

List of publications supported by pMedGR

bottom of page